PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025904P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRAS

Protein Properties

Length: 722aa MW: 81961.7 Da PI: 5.4894

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025904P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	351	1.9e-107	344	719	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+avss+d + a +lL++++++++ +gd qR+ ++f++AL+ar+++++++ ++ ++s+ + ++ l+a+++ +P+ k+s MELO3C025904P1 344 LRNLLILCAQAVSSDDRRIAYELLKQIRQHSATNGDGSQRMSHFFANALEARMVGNGTGSRIYYESLSQSNITAADMLKAYQVHLSSCPFKKLSL 438 6899************************************************94433333334444444459***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + ++Il+ +e+++ +H+iDf+i +G+ Wp L+q La+ p+gpp+lRiTg+++p +g +e++ee g+rLak++e+++vpf++++++++++e+ MELO3C025904P1 439 FFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPKLRITGIDHPLPGfrPAEKIEESGRRLAKYCERFKVPFQYQAIASNNWET 533 ***************************************************99999************************999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e++++++ ++l+Vn+ ++ +llde+v+ +s+rd+vL+l+++++Pk++v++ + ++ ++ F +rf eal ++sal+d+l+++lpr+s+er+ MELO3C025904P1 534 IRIEDFKLDSSDVLVVNCFYRFNNLLDETVEESSPRDTVLRLIRKMNPKIFVHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERM 628 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++Ere+lgr+i+nvv+ceg +r+er et+++W+ r ++aGF+++pl+++++++ ++ l ++ + + ++e++g++++gWk+r +++ ++W+ MELO3C025904P1 629 MLEREFLGRQIMNVVSCEGVQRVERPETYKQWQVRCMRAGFRQLPLDKEIMSKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWE 719 **********************************************************888***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.288	318	699	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-105	344	719	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MDPNLNHFPQ TPSTQFNDQT SYLYPELQNS FVFNGPSLNL VPFVENSLFP YKPDPSPAME 60 LKLAGGVPVM APGRSPGGDS SSDESDFKES VLKYISQMLM EENLEEMPCM FYDPLGLEVT 120 EKSFYDVLGN TDNYPPSPNQ PPLLDCDSDR ASTNVSVGNS NSPDSQSVVD PGDYKSSILQ 180 TPFLSNSHEL VNELLAQNIF SDSKSILQYQ KGLEEASKFL PVGNQLNIDL GSGMGTGVVS 240 KVMDTTEKDQ REKSPNGSKR RKSRERENVE LDSEEGRRNK HATIYMDEEE LSEMFDKVLL 300 HDCGNETTAN GGGENLQSNR QVHGSVTAKA REKKQEKRKD SVDLRNLLIL CAQAVSSDDR 360 RIAYELLKQI RQHSATNGDG SQRMSHFFAN ALEARMVGNG TGSRIYYESL SQSNITAADM 420 LKAYQVHLSS CPFKKLSLFF MIKMILKVAE NAKSLHVIDF GICYGFLWPM LIQFLAQLPD 480 GPPKLRITGI DHPLPGFRPA EKIEESGRRL AKYCERFKVP FQYQAIASNN WETIRIEDFK 540 LDSSDVLVVN CFYRFNNLLD ETVEESSPRD TVLRLIRKMN PKIFVHSVVN GSYHAPFFIT 600 RFREALFHFS ALYDALDVNL PRDSDERMML EREFLGRQIM NVVSCEGVQR VERPETYKQW 660 QVRCMRAGFR QLPLDKEIMS KFRSKLTSYY HKDFVLDEDE GWMLQGWKGR IVYASCCWES 720 A*

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MDPNLNHFPQ TPSTQFNDQT SYLYPELQNS FVFNGPSLNL VPFVENSLFP YKPDPSPAME  60
LKLAGGVPVM APGRSPGGDS SSDESDFKES VLKYISQMLM EENLEEMPCM FYDPLGLEVT  120
EKSFYDVLGN TDNYPPSPNQ PPLLDCDSDR ASTNVSVGNS NSPDSQSVVD PGDYKSSILQ  180
TPFLSNSHEL VNELLAQNIF SDSKSILQYQ KGLEEASKFL PVGNQLNIDL GSGMGTGVVS  240
KVMDTTEKDQ REKSPNGSKR RKSRERENVE LDSEEGRRNK HATIYMDEEE LSEMFDKVLL  300
HDCGNETTAN GGGENLQSNR QVHGSVTAKA REKKQEKRKD SVDLRNLLIL CAQAVSSDDR  360
RIAYELLKQI RQHSATNGDG SQRMSHFFAN ALEARMVGNG TGSRIYYESL SQSNITAADM  420
LKAYQVHLSS CPFKKLSLFF MIKMILKVAE NAKSLHVIDF GICYGFLWPM LIQFLAQLPD  480
GPPKLRITGI DHPLPGFRPA EKIEESGRRL AKYCERFKVP FQYQAIASNN WETIRIEDFK  540
LDSSDVLVVN CFYRFNNLLD ETVEESSPRD TVLRLIRKMN PKIFVHSVVN GSYHAPFFIT  600
RFREALFHFS ALYDALDVNL PRDSDERMML EREFLGRQIM NVVSCEGVQR VERPETYKQW  660
QVRCMRAGFR QLPLDKEIMS KFRSKLTSYY HKDFVLDEDE GWMLQGWKGR IVYASCCWES  720
A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-43	333	718	7	377	Protein SCARECROW
5b3h_D	7e-43	333	718	7	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681919	0.0	LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008464110.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S3CM81	0.0	A0A1S3CM81_CUCME; scarecrow-like protein 34
STRING	XP_008464110.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]