PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025807P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 532aa    MW: 58865.6 Da    PI: 6.5088
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025807P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15200259155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  MELO3C025807P1 200 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 259
                     78*******************655454478446*************************98 PP
2AP246.68.6e-15304353355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MELO3C025807P1 304 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 353
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-17200269IPR016177DNA-binding domain
CDDcd000181.18E-21200269No hitNo description
PfamPF008478.9E-12200259IPR001471AP2/ERF domain
SMARTSM003806.7E-30201273IPR001471AP2/ERF domain
PROSITE profilePS5103219.111201267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-16201268IPR001471AP2/ERF domain
PRINTSPR003671.1E-6202213IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18302363IPR016177DNA-binding domain
CDDcd000181.80E-24302363No hitNo description
SMARTSM003802.1E-34303367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18303361IPR001471AP2/ERF domain
PROSITE profilePS5103219.137303361IPR001471AP2/ERF domain
PfamPF008471.6E-9304353IPR001471AP2/ERF domain
PRINTSPR003671.1E-6343363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIHGSST PPADEQPNTA AFPHLMPLRS DGTLCISAPH DWRSYENEEG  60
SPKLEDFLGN CYSNSPPNDQ THNNNGAGFI QPNNNSNNNE DDDNYNYQAH QSLTPNNTNA  120
IDKSWLGATS QNECGSFQSL SLGMSPANSQ NDIASLTSPP SPSPPHMAAD SRKRPMTVAK  180
AFIKEPVPRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY  240
DKEEKAARAY DLAALKYWGS TTHINFPLST YESELEEMKN MTRQEFVANL RRKSSGFSRG  300
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF  360
DISRYDVKRI CSSSTLIAGD LAKRSPLKDG VPSTTEDYTT CASPSSSSQP LLAITDGSAE  420
SHHELADMVW CDNAVADDSN QHHENVAKMD NDLSLMGSSN RTIDASTKCS PVRNNEEFAG  480
IGVGVGVGGG DQYPQGYFSM QEEKYEEGDQ NRQMNVTLGH HHAPMFALWN Q*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818280.0LN681828.1 Cucumis melo genomic scaffold, anchoredscaffold00083.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463998.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-137AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3CKZ70.0A0A1S3CKZ7_CUCME; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_008463998.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-134AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]