PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025804P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 343aa    MW: 38203.2 Da    PI: 7.5405
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025804P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.6e-2576119144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  MELO3C025804P1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119
                     79***************************************997 PP
2QLQ59.87.7e-211045136
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    s+FTa+Q+q+L++Q+l++K++++++P+Pp+L++ ++
  MELO3C025804P1 10 SPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVK 45
                    89******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9611146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-151144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94176120IPR014977WRC domain
PfamPF088793.1E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNSSPKTCTS PFTATQWQEL EHQALIFKHM VSGVPIPPDL IFSVKRSLDS SISARLFPHQ  60
PIGWGCFEMG FGRKTDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEI  120
SSTPPTQTPT PLILTSTRTL SSSSPTPTSS SYPLSTLSSS SSLTSETQSY HQPPPPAYHE  180
SSIHPFLYSQ SSSRTPCSDF SSNNTNPQLF LYSGTHSQAD KDYRDISGPR EGVGMQAFFP  240
SVADSARSIA EVYSQPIGMD SYKGCSQYVS QNHQIYSSKQ ARQQQEQHCF VLGTDFNKSS  300
RSAKTEEEDE DAETQKPLLH FFEDCPPKTS DSWLDLASNS NG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818280.0LN681828.1 Cucumis melo genomic scaffold, anchoredscaffold00083.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463996.10.0PREDICTED: growth-regulating factor 5 isoform X2
TrEMBLA0A1S3CKH60.0A0A1S3CKH6_CUCME; growth-regulating factor 5 isoform X2
STRINGXP_008463995.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-64growth-regulating factor 5