PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025765P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YC | ||||||||
Protein Properties | Length: 223aa MW: 25030.2 Da PI: 9.8779 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.2 | 2.4e-15 | 113 | 204 | 8 | 99 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ e++++ k ++P+ rikki++ ++ +i ea l+ ka e+f++++ ++ + + ++++l ++++v++ + +dfl d vp++ MELO3C025765P1 113 EEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 204 566778888999************9999999**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.4E-17 | 92 | 197 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-16 | 125 | 188 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-23 | 126 | 203 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MASSKKSSTE AKGKEAGTSK PAPKAKTHNN ARNSDKEISK KKKKKKKISI STNNGSVKDN 60 EVLAVSPPGG SASEDDDAAD EDKAETTSRK HKTSKSKKVK RNHAKEEDNG YAEEEEEEAE 120 EKIYKFPMHR IKKIMRDENS DLRINQEALF LVNKASEMFL VQFCKDAYAC CAQDRKKSLA 180 YKHLSSVVSK RKRYDFLSDF VPEKLKFEDA LKERSMAESG KD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | KKKKKKK |
2 | 174 | 192 | RKKSLAYKHLSSVVSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 0.0 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463933.1 | 1e-159 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A1S3CKU7 | 1e-158 | A0A1S3CKU7_CUCME; DNA polymerase epsilon subunit C | ||||
STRING | XP_008463933.1 | 1e-159 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-33 | nuclear factor Y, subunit C10 |