PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025701P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 162aa MW: 18044.5 Da PI: 4.7106

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025701P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132	2.5e-41	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp e+p kfa+vhk+FGasnv+k+l+++p ++r da+ss+vyeA ar++dPvyG+vg+i lq+++++l+ +l MELO3C025701P1 7 PCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLG 101 7********************************************************************************************99 PP DUF260 96 llkee 100 ++++e MELO3C025701P1 102 AAQAE 106 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.737	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-40	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGVGSSPCAS CKLLRRRCAK DCIFAPYFPP EDPLKFAIVH KIFGASNVSK MLQEVPIDQR 60 ADAVSSMVYE ASARMQDPVY GCVGTIAFLQ NEVSRLEIQL GAAQAEILTL QMRQQETSTT 120 FPTTTTQMDQ DEQNLMIFSN TDSSNSLHIF QATEDYYHMW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-47	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-47	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681922	0.0	LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463841.1	1e-120	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	4e-66	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S3CKM4	1e-118	A0A1S3CKM4_CUCME; LOB domain-containing protein 12-like
STRING	XP_008463841.1	1e-119	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-67	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]