PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025357P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 266aa    MW: 27601.9 Da    PI: 10.4015
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025357P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.3e-3742114374
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                      kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  
  MELO3C025357P1  42 LKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStI 114
                     69*************************************************************9999977731 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3247127IPR005333Transcription factor, TCP
PROSITE profilePS5136927.99247101IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSASDAVNNN NAAIIEHSHQ QHTHRIHGNN QSSNNAATPL PLKKPPSKDR HSKVDGRGRR  60
IRMPIVCAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTISASLRT  120
PPAASVSDHK PLLPPAPFIL GKRVRTDDDV ANKDDTGGAG AGISVGPSIG SIMGPAVAGG  180
YWAIPARSDF GQVWSFAAAA AAAAAPEMVI QPTAVSHQAS LFVQQQSMGE ASAAKVGNYL  240
PGHLNLLASL SGGPGSSGRR DNDHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818590.0LN681859.1 Cucumis melo genomic scaffold, anchoredscaffold00078.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463404.10.0PREDICTED: transcription factor TCP21-like
SwissprotQ9FMX21e-85TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1S3CJ760.0A0A1S3CJ76_CUCME; transcription factor TCP21-like
STRINGXP_008463404.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-64TCP family protein