PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025338P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HSF

Protein Properties

Length: 292aa MW: 33337.8 Da PI: 5.4536

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025338P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.8	3.4e-33	14	106	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+y++++d+ ++++isw + +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+ +ll++ MELO3C025338P1 14 FVLKTYQMVNDPLTDSFISWGSANNSFIVLDPLHFSHTLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQFQLLKN 99 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ MELO3C025338P1 100 IVRRKQS 106 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.9E-49	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.5E-35	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.3E-32	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.0E-28	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-17	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-17	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-17	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEPNSSNKDI VAPFVLKTYQ MVNDPLTDSF ISWGSANNSF IVLDPLHFSH TLLPAFFKHN 60 NFSSFVRQLN TYGFRKVDPD RWEFANEWFL RGQFQLLKNI VRRKQSCNKY LIGDQMGDEE 120 LVTEIARLRK EQRALEEQLE GMKKRLETTE KRPQQMMAFL HKVVEDPEIL PRIMLHKDPT 180 RLQLSEKKRR LMISSSSSSP STTTLTEGDE IEEDSNNPQD FGPNFSSPEV SGPWFLREAE 240 GNLGIPIPPV PAIDLGISSN GGERKYLTEM TVEETHPPPP PYPFSLFGCG F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-24	3	103	18	129	Heat shock factor protein 1
5d5v_B	7e-24	3	103	18	129	Heat shock factor protein 1
5d5v_D	7e-24	3	103	18	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681810	0.0	LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463387.1	0.0	PREDICTED: heat stress transcription factor C-1-like
Swissprot	Q9LV52	1e-83	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A1S3CJ61	0.0	A0A1S3CJ61_CUCME; heat stress transcription factor C-1-like
STRING	XP_008463387.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8367	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-82	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]