PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025070P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 853aa MW: 94646 Da PI: 6.2272 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 4e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ MELO3C025070P1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ MELO3C025070P1 219 KNQLLLGIRRA 229 9999****997 PP | |||||||
2 | Auxin_resp | 119.5 | 2.6e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv+++ k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k MELO3C025070P1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337 79********************************86599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.63E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.252 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-23 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-34 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 9.32E-8 | 719 | 801 | No hit | No description |
Pfam | PF02309 | 4.4E-8 | 724 | 811 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.593 | 727 | 811 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MKLSTSGFGQ QDHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNK 60 EVDGHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTAQEQKD TFLPMELGIP 120 SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA KDLHDIEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LTKYVKAVFH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSLF PLRMKRPWHP GVSSVHDNRD DASNGLMWLR GGVGEQGLHS LNLQSVGSLP 420 WLQQRLDSSM FGNDHNQQYQ AMLAAGMPNL GGVDMLRQQI MHLQQPFQYI PQAGFHNSLL 480 QMQQQQQQQQ QQQQQLVQQS MPQNILQAPS QVMAENLPPH ILQQTLQNQP EDLPNQQQHT 540 YHDTIQVQGN QFHQGGHSNV PSPTFPRTDL MDSNTSYSES ITSRRNILAS SCAEGTGNLP 600 TIYRSGQSIL TEHLPQQSSV SKNAHSQVDA HPNSMSFPPF SGRDSILELG NCNSDSPSPT 660 LFGVNIDSSG LLLPSNVPTY SSPSIGPDSS SIPMGDSGFQ NSLYSCVQDS SELLHNSGQV 720 DPSNPTRTFV KVYKSGSVGR SLDISRFSSY QELREELAQM FGIEGQLEDP HRSGWQLVFV 780 DRENDVLLLG DDPWEAFVNN VGYIKILSPE DFQKLGEQAI ESFNPIVGQR LTSGGNEAGN 840 VSGLPSVGSL EY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 11 | 358 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323407 | 0.0 | KU323407.1 UNVERIFIED: Trichosanthes dioica clone TdARF_5 auxin response factor 8-like mRNA, partial sequence. | |||
GenBank | KU323421 | 0.0 | KU323421.1 UNVERIFIED: Trichosanthes dioica clone TdARF_29 auxin response factor 8-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463127.1 | 0.0 | PREDICTED: auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A1S3CIX2 | 0.0 | A0A1S3CIX2_CUCME; Auxin response factor | ||||
STRING | XP_008463127.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |