PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025049P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 262aa MW: 27495.8 Da PI: 9.5631 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116 | 4.8e-36 | 40 | 111 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i++ tgt++++as++ MELO3C025049P1 40 PVKKTPYKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIATTGTGTTPASFS 111 579*************************************************************99999777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-31 | 46 | 121 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.514 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSASDGVNNN NAAIIDPSHQ QHIHQIQANQ SSNNATTPLP VKKTPYKDRH SKVDGRGRRI 60 RMPIVCAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAT TGTGTTPASF STISASLRTP 120 PAASVFDHKP LLPPAPFILG KRVRTDDDEA NKDDTGGDGP GISVGPSIGS IMGPAVAGGY 180 WAIPARSDFG QLWSFAAAAA APEMVIQPTA VSHQASLFVQ QQSMGEASAA KVGNYLPGHL 240 NLLASLSGGP GSSGRRDNDH R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681894 | 0.0 | LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463113.1 | 0.0 | PREDICTED: transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 3e-84 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1S3CIF9 | 0.0 | A0A1S3CIF9_CUCME; transcription factor TCP21-like | ||||
STRING | XP_008463113.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 7e-65 | TCP family protein |