PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024739P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 345aa    MW: 37742.8 Da    PI: 8.3221
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024739P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.8e-25100144145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  MELO3C024739P1 100 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 144
                     79****************************************986 PP
2QLQ49.81e-173066137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s+FT  Q+q+L+ Q+l++K ++a+qPvPpeL++ iqk
  MELO3C024739P1 30 SPFTVLQWQELELQALIFKFMMAGQPVPPELVLLIQK 66
                    89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.4E-113066IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9273166IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-133165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762100144IPR014977WRC domain
PfamPF088794.0E-21101143IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNNSGGGGED GSRTVVLGGT ASGMMGMNRS PFTVLQWQEL ELQALIFKFM MAGQPVPPEL  60
VLLIQKSFES ISHRFFHHPT SNLTSTLSLA YCSFYGKKVD PEPGRCRRTD GKKWRCSKDA  120
YPDSKYCERH MHRGRNRSRK PVESQTMTQS SSTVTSLTAT GSSSTGTGSF HGLPLNALSN  180
SQTTTTGTSQ PHYPLDSIPY GIPSKDYRYL QGLRPEAGVH SFFSEASGSS RAVQMDAPID  240
NTWPMMSSRS PSFPTSKSTE NSIFQSGYAQ HSFFGGEYAS GETLKQEGQS LQPLFDEWPR  300
TRESWTGLDD ERSNQTSFST TQLSISIPMA SSDLSTTSSK SPHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819150.0LN681915.1 Cucumis melo genomic scaffold, anchoredscaffold00070.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462790.10.0PREDICTED: growth-regulating factor 4-like
TrEMBLA0A1S3CHP30.0A0A1S3CHP3_CUCME; growth-regulating factor 4-like
STRINGXP_004156783.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-41growth-regulating factor 5