PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024696P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 391aa    MW: 42638 Da    PI: 6.8311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024696P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492472851255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  MELO3C024696P1 247 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 285
                     6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-10245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.05E-6245289No hitNo description
Gene3DG3DSA:4.10.280.103.4E-7249291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNRGVLQSSV MQQMMGSENP NWWNMMNISG SMRSSTITQH SSPNHTNNSS SSSSNILFPH  60
SSLPFPSNCY YDAQDHQLIP ESWSQLLLGG LVVEDDQKGC MGMFQSKKLE DWEEEILNSN  120
NNNNTQHQQQ VDVKKEHSPH ANSYVYGHGG GGGVGGGDDY QLVASKQNWS PMIQSSSPQS  180
CVTSFSSNML DFSNNNNNNK SLADHSRPRN PPPVLDRSSE CNSNVNGGAA KKARVQSSSN  240
QTTFKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQSQIEA LSLPYLGNTS  300
GSTRQHQHQQ HSVQAGERNC VFPEDPGQLL NENCLKRKGV SEQEEEGKKD LRSRGLCLVP  360
VSCTLQVGSD NGADYWAPAF GGGGGGGVFR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818110.0LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462742.10.0PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8S3D15e-87BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1S3CJ890.0A0A1S3CJ89_CUCME; transcription factor bHLH68 isoform X1
STRINGXP_008462742.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]