PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024686P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CPP
Protein Properties Length: 324aa    MW: 35111.8 Da    PI: 8.1829
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024686P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53.1e-14126165242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  MELO3C024686P1 126 QCKLCNCKHSRCLKLYCECFASGVYCDG-CNCTNCHNNVEH 165
                     7999************************.********9876 PP
2TCR521.4e-16210249140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MELO3C024686P1 210 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 249
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-15125165IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.747126250IPR005172CRC domain
PfamPF036381.4E-10128162IPR005172CRC domain
SMARTSM011148.4E-20210251IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-13213248IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGEVGNQEMD NLSSVIAQTD SVELGNVVSS DVPAKKLARQ LDFTGIGGAV LPEHPHFQSR  60
SRCQESESPA VIVVQSQSQP QSPQQVVVLP IGTKAPLPPA RKPDSPKSRS RSNVETKDAT  120
PKKQKQCKLC NCKHSRCLKL YCECFASGVY CDGCNCTNCH NNVEHEASRR EAVETTLERN  180
PNAFRPKIAN SPHGTRESRD EIGELVMLGK HNKGCHCKKS GCLKKYCECF QANILCSENC  240
KCMDCKNFEG SEERQALFHG DHANNMAYIQ QAANAAITGA IGTSGYACLP VSKKRKGPEL  300
GFGPVGKDSP LNSIPQLHQV VSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-3312825912132Protein lin-54 homolog
5fd3_B5e-3312825912132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818110.0LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462731.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-116TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S3CJ790.0A0A1S3CJ79_CUCME; protein tesmin/TSO1-like CXC 5
STRINGXP_008462730.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-92Tesmin/TSO1-like CXC domain-containing protein