PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024673P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 623aa    MW: 71756.2 Da    PI: 6.6346
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024673P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.54e-14131192167
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                     +W+++e laL+++r+++e+ + ++      We+vs+k+ e gf+r++ +Ckek+e+ ++++  i+ +
  MELO3C024673P1 131 QWSNDELLALLRIRSNIENCFPES-----TWEHVSRKLGEVGFRRTADKCKEKFEEESRYFNHINYN 192
                     7******************99998.....9*******************************988755 PP
2trihelix94.41.1e-29491586186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                     rW+++evlaL+++r +m ++  +++           lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+q
  MELO3C024673P1 491 RWPRDEVLALVNVRCKMYNNNTNNNhqdeglsggasLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQ 584
                     8**************888877765445566666666*********************************************8.9999******** PP

        trihelix  85 le 86 
                     l 
  MELO3C024673P1 585 LS 586
                     95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071739128185IPR001005SANT/Myb domain
PfamPF138371.1E-8130191No hitNo description
PROSITE profilePS500906.481132183IPR017877Myb-like domain
SMARTSM007170.043488561IPR001005SANT/Myb domain
PfamPF138371.4E-18490586No hitNo description
CDDcd122031.92E-21490566No hitNo description
PROSITE profilePS500906.179491559IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MFEGGSVSEQ LHQFLTPRTT PPPPPNSNSL PLIPLNFALH SPNFNFHPFD SYNATSTTHH  60
HHHQIHLHHH PHHLLHHQSP NPHGDDKNDD KTTTTGTGSN LQVGVDLEVG RENNNNRSIL  120
MEDHHIIHYD QWSNDELLAL LRIRSNIENC FPESTWEHVS RKLGEVGFRR TADKCKEKFE  180
EESRYFNHIN YNKSCRFLTH ELNYNHHPNQ DQDHLLLIHE ENGKPDEGGP TLVVVPEEGE  240
EENEDKDGEL HEEEEEGEDL RNNKIRAGTN NEEERNDSSR SSSCKKSKKK RKMMRQKEFE  300
LLKGYCEEIV KKMMIQQEEI HSKLLQDMLK KEEEKVAKEE YWKKEQMERL HKELEVMAHE  360
QAIAGDRQAT IIEILNQITN STTLISSSHE SKKDLQNLLQ SLNNYNKNNN IPNSTPSSSS  420
LIQCQTSSPN KKPPHENSNS FTSQNDPIKN PKNNPCLSTQ ILEDPNSFIN NHSNPKSKEK  480
LDHESEDLGK RWPRDEVLAL VNVRCKMYNN NTNNNHQDEG LSGGASLKAP LWERISQGML  540
QLGYKRSAKR CKEKWENINK YFRKTKDVNK KRSLDSRTCP YFHQLSTLYN QGGGNSTSLE  600
NCPIVSSENH SDHSENHLAT SS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818110.0LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462720.10.0PREDICTED: trihelix transcription factor GTL2 isoform X1
TrEMBLA0A1S3CHL00.0A0A1S3CHL0_CUCME; trihelix transcription factor GTL2 isoform X1
STRINGXP_008462720.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-62Trihelix family protein