PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C024507P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 22905.8 Da PI: 6.6833 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 43 | 96 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle+Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k MELO3C024507P1 43 KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQPRQIAVWFQNRRARWK 96 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120 | 1.2e-38 | 42 | 134 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rls++q+++LE+sF+ee kL+p+rK++l+ eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++d++++e+++L++ev +Lr+ l+e MELO3C024507P1 42 QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLRE 134 69**************************************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.989 | 38 | 98 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.61E-19 | 40 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-18 | 41 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-16 | 42 | 99 | No hit | No description |
Pfam | PF00046 | 1.3E-17 | 43 | 96 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 44 | 105 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-5 | 69 | 78 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 73 | 96 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-5 | 78 | 94 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.6E-9 | 98 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVIKEETDRY SQPSSVQLVI ETATRVATGE GKQNMAGGVD HQKKKRLSQD QLEALERSFQ 60 EEVKLDPDRK MKLSMELGLQ PRQIAVWFQN RRARWKTKQL EHLYDTLKQQ FDTISKEKHN 120 LQQEVMKLRN MLREQTTRNA GSMAHTDISG EETTVECTSV EILSCNNYMY NVEDFNQISA 180 SAPPFWWGAE AAHLPSYP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 98 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681876 | 0.0 | LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462523.1 | 1e-134 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 6e-46 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S3CIQ6 | 1e-133 | A0A1S3CIQ6_CUCME; homeobox-leucine zipper protein ATHB-22-like | ||||
STRING | XP_008462523.1 | 1e-134 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-48 | homeobox 51 |
Publications ? help Back to Top | |||
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