PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024411P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 394aa    MW: 43328.1 Da    PI: 6.7856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024411P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08295335954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  MELO3C024411P1 295 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 335
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-12294349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5295335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.22E-5308340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDHLNWNGYG SRVAKKTTAS TTSSSSFWSN YQQGVEERFM ISSSNNSNFF NSVQDFPIKV  60
AENSSTPVLK TEDPLVMSPP LTSFTTSSNM DVVGFLSQLD HGSNGDKSAT VTTCSLESLD  120
CLLSATNSNT DTSVEDDGSV SMMLTDYTNL WNFGGNAAVS SKESEKNGSN STKRSHEQTQ  180
FKAADYSIFS NNIINLSDST SDSGGFRIIT DHNLPKQKKP RSEKPPSSSN INFQQSCSSG  240
SSCIDQEPDP EAIAQMKEMI YRAAAFRPVN LGLEMIEKPK RKNVRISTDP QTVAARQRRE  300
RISERIRVLQ RLVPGGSKMD TASMLDEAAN YLKFLKSQIK ALENLGQKLE SLNCPPTSIA  360
FSFNPSFPIQ TSSSHNNFTL LNPNHLINQY PQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462383.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D28e-83BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1S3CGV30.0A0A1S3CGV3_CUCME; transcription factor bHLH87
STRINGXP_008462383.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]