PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024387P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 289aa    MW: 32397.2 Da    PI: 5.6061
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024387P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601279.1e-40331321100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+e+am+++++++++r  dPv G++++i++lq+q+e  kael+
  MELO3C024387P1  33 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELE 127
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                      + ++
  MELO3C024387P1 128 IVLHQ 132
                     98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.29332133IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-3733128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSPITHHHHN HHHHLSKSST APVTTTTSST TQACAACKYQ RRKCAPDCIL APYFPHDRQR  60
QFLNAHKLFG VSNITKIIKN LDPFEKEEAM RTIIFQSDVR SVDPVGGCYR IIRDLQRQIE  120
YNKAELEIVL HQLAICKQQA AAAAAAAAAA AILEGDPMSG YSGIEHQFVE GYEGEGFVVG  180
ENENGESLED QEVEVWGIQD SSCSSLQLKQ AGSVHDFHDI KIDDNNQQHQ QQLKFQIDHH  240
DLVHRSEEPM LKMDNMILKE DSDPIQQVQD QELKGAIDTL FTFPTCDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-28261274105LOB family transfactor Ramosa2.1
5ly0_B4e-28261274105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902828.11e-160PREDICTED: LOB domain-containing protein 22, partial
SwissprotQ9LRW12e-54LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A0A0K9M31e-167A0A0A0K9M3_CUCSA; Uncharacterized protein
STRINGXP_008462351.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-55LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]