PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C024387P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 289aa MW: 32397.2 Da PI: 5.6061 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127 | 9.1e-40 | 33 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+e+am+++++++++r dPv G++++i++lq+q+e kael+ MELO3C024387P1 33 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELE 127 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ MELO3C024387P1 128 IVLHQ 132 98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-37 | 33 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MSPITHHHHN HHHHLSKSST APVTTTTSST TQACAACKYQ RRKCAPDCIL APYFPHDRQR 60 QFLNAHKLFG VSNITKIIKN LDPFEKEEAM RTIIFQSDVR SVDPVGGCYR IIRDLQRQIE 120 YNKAELEIVL HQLAICKQQA AAAAAAAAAA AILEGDPMSG YSGIEHQFVE GYEGEGFVVG 180 ENENGESLED QEVEVWGIQD SSCSSLQLKQ AGSVHDFHDI KIDDNNQQHQ QQLKFQIDHH 240 DLVHRSEEPM LKMDNMILKE DSDPIQQVQD QELKGAIDTL FTFPTCDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-28 | 26 | 127 | 4 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-28 | 26 | 127 | 4 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 0.0 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016902828.1 | 1e-160 | PREDICTED: LOB domain-containing protein 22, partial | ||||
Swissprot | Q9LRW1 | 2e-54 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A0A0K9M3 | 1e-167 | A0A0A0K9M3_CUCSA; Uncharacterized protein | ||||
STRING | XP_008462351.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-55 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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