PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C024385P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 458aa MW: 49992.5 Da PI: 9.1232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C024385P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MELO3C024385P1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	11.4	0.001	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + MELO3C024385P1 173 WKCDKCSKKYAVQSDWKAHSKIC 195 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.52E-7	95	118	No hit	No description
PROSITE profile	PS50157	10.949	96	118	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.1E-5	96	118	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	138	168	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.3E-4	161	194	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.52E-7	168	193	No hit	No description
SMART	SM00355	150	173	193	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MMMKGNFLSQ QQQQQQQQIV VMDENLSNLT SASGEATVSV SSANKSEFSN QYFAPQTTQQ 60 QPPPPPKKKR NLPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSNK EIIKKKVYVC PEVSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK 180 KYAVQSDWKA HSKICGTKEY RCDCGTLFSR RDSFITHRAF CDALADESAR SAMALNPLLS 240 SYNRNNNNNN SNSQDHQFCN NLALKRDFDN SSNSNNNNNN NHHLRVEIPP WLQPSSDHLM 300 VGSGGQDENN DETVNPNPSS SSSRGCGASR RSVGVGVGTP NNPNPCELYQ SSSHISATAL 360 LQKAAQMGAT MSSTTTTSGS FPRPHNLLHV STGNFGEMGL WSGDVEIGRG GGGGAVSCSS 420 SSCTDYGNKA AAASASASAS ASASLLRLFH HFSSRHY*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MMMKGNFLSQ QQQQQQQQIV VMDENLSNLT SASGEATVSV SSANKSEFSN QYFAPQTTQQ  60
QPPPPPKKKR NLPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EIIKKKVYVC PEVSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
KYAVQSDWKA HSKICGTKEY RCDCGTLFSR RDSFITHRAF CDALADESAR SAMALNPLLS  240
SYNRNNNNNN SNSQDHQFCN NLALKRDFDN SSNSNNNNNN NHHLRVEIPP WLQPSSDHLM  300
VGSGGQDENN DETVNPNPSS SSSRGCGASR RSVGVGVGTP NNPNPCELYQ SSSHISATAL  360
LQKAAQMGAT MSSTTTTSGS FPRPHNLLHV STGNFGEMGL WSGDVEIGRG GGGGAVSCSS  420
SSCTDYGNKA AAASASASAS ASASLLRLFH HFSSRHY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-34	169	230	3	64	Zinc finger protein JACKDAW
5b3h_F	8e-34	169	230	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462349.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-124	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S3CGT8	0.0	A0A1S3CGT8_CUCME; protein indeterminate-domain 7
STRING	XP_008462349.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-105	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]