PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024360P4
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 543aa    MW: 59860.1 Da    PI: 5.9363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024360P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-08424472348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   MELO3C024360P4 424 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 472
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987417476IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-12419480IPR009057Homeodomain-like
SMARTSM007174.0E-8421474IPR001005SANT/Myb domain
CDDcd116601.00E-19423473No hitNo description
SuperFamilySSF466891.79E-15423482IPR009057Homeodomain-like
PfamPF002491.2E-5424472IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEVEDLLEDD KNEKVEDAGQ IVGCKPTEDT LFGKPHVEVL NDKPGLPQSD TFEAAADYNA  60
RLEYIEEVLQ KVKQEERLRL TCGSPNYTSA YVNGDGKGSD EHGRLPVIDE KLQSNVSLQE  120
NHVNENGSLG DCLKHPDKSV ESESSDALCT TSNPDFSLLK GDICLDNLSI RELRECFKAT  180
FGRDTTVKDK SWLKRRIAMG LTNSCDIPAS SFIIKEGKFV EESSPNVEGM STAPTAETLN  240
IECRVSPTTY SLENKDLHHS EDMELDHGSE GQHDERAAVK RVRKPTRRYI EELSEVESRE  300
YVQKVVSLNK NTISDSISAN SIARPIKKVY SDGGRTVITR LDSLGGSGFQ VPCVSRVRRS  360
RPRKDVVGLV FALPEKDQNP SVTVTDEVEK TLEQKQTASD NVSDDNTAVV PTTKGGMRRK  420
HHRAWTLVEV IKLVEGVSKC GAGKWSEIKK LSFSSYSYRT SVDLKDKWRN LLKASLVQTP  480
VDEGISSRKH ASISIPAQIL LRVRELAEMH AQIPPSSHGQ GKLGGGGVGE SMHEMSSSTV  540
CS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357363RRSRPRK
2357364RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462320.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X2
RefseqXP_008462321.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X2
TrEMBLA0A1S3CGR30.0A0A1S3CGR3_CUCME; uncharacterized protein LOC103500701 isoform X2
STRINGXP_008462318.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.26e-47TRF-like 6