PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024360P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 481aa    MW: 53033.7 Da    PI: 7.3294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024360P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-08362410348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   MELO3C024360P3 362 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 410
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987355414IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-12357418IPR009057Homeodomain-like
SMARTSM007174.0E-8359412IPR001005SANT/Myb domain
CDDcd116607.91E-20361411No hitNo description
SuperFamilySSF466891.47E-15361420IPR009057Homeodomain-like
PfamPF002499.9E-6362410IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MYIEEVLQKV KQEERLRLTC GSPNYTSAYV NGDGKGSDEH GRLPVIDEKL QSNVSLQENH  60
VNENGSLGDC LKHPDKSVES ESSDALCTTS NPDFSLLKGD ICLDNLSIRE LRECFKATFG  120
RDTTVKDKSW LKRRIAMGLT NSCDIPASSF IIKEGKFVEE SSPNVEGMST APTAETLNIE  180
CRVSPTTYSL ENKDLHHSED MELDHGSEGQ HDERAAVKRV RKPTRRYIEE LSEVESREYV  240
QKVVSLNKNT ISDSISANSI ARPIKKVYSD GGRTVITRLD SLGGSGFQVP CVSRVRRSRP  300
RKDVVGLVFA LPEKDQNPSV TVTDEVEKTL EQKQTASDNV SDDNTAVVPT TKGGMRRKHH  360
RAWTLVEVIK LVEGVSKCGA GKWSEIKKLS FSSYSYRTSV DLKDKWRNLL KASLVQTPVD  420
EGISSRKHAS ISIPAQILLR VRELAEMHAQ IPPSSHGQGK LGGGGVGESM HEMSSSTVCS  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRPRK
2295302RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902835.10.0PREDICTED: uncharacterized protein LOC103500701 isoform X4
TrEMBLA0A1S4E4D20.0A0A1S4E4D2_CUCME; uncharacterized protein LOC103500701 isoform X4
STRINGXP_008462318.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.26e-45TRF-like 6