PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024360P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 599aa    MW: 65860.7 Da    PI: 5.1654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024360P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.7e-08480528348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   MELO3C024360P2 480 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 528
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987473532IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-12475536IPR009057Homeodomain-like
SMARTSM007174.0E-8477530IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-15479538IPR009057Homeodomain-like
CDDcd116609.49E-20479529No hitNo description
PfamPF002491.3E-5480528IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
METEVGIVEN ERKIVESGAA EDGSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLLEDDKNEK VEDAGQIVGC KPTEDTLFGK PHVEVLNDKP GLPQSDTFEA AADYNARLEY  120
IEEVLQKVKQ EERLRLTCGS PNYTSAYVNG DGKGSDEHGR LPVIDEKLQS NVSLQENHVN  180
ENGSLGDCLK HPDKSVESES SDALCTTSNP DFSLLKGDIC LDNLSIRELR ECFKATFGRD  240
TTVKDKSWLK RRIAMGLTNS CDIPASSFII KEGKFVEESS PNVEGMSTAP TAETLNIECR  300
VSPTTYSLEN KDLHHSEDME LDHGSEGQHD ERAAVKRVRK PTRRYIEELS EVESREYVQK  360
VVSLNKNTIS DSISANSIAR PIKKVYSDGG RTVITRLDSL GGSGFQVPCV SRVRRSRPRK  420
DVVGLVFALP EKDQNPSVTV TDEVEKTLEQ KQTASDNVSD DNTAVVPTTK GGMRRKHHRA  480
WTLVEVIKLV EGVSKCGAGK WSEIKKLSFS SYSYRTSVDL KDKWRNLLKA SLVQTPVDEG  540
ISSRKHASIS IPAQILLRVR ELAEMHAQIP PSSHGQGKLG GGGVGESMHE MSSSTVCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413419RRSRPRK
2413420RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462318.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X1
RefseqXP_008462319.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X1
TrEMBLA0A1S3CI770.0A0A1S3CI77_CUCME; uncharacterized protein LOC103500701 isoform X1
STRINGXP_008462318.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-57TRF-like 6