PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024360P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 345aa    MW: 37788.6 Da    PI: 8.4729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024360P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-08226274348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   MELO3C024360P1 226 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 274
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987219278IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-12221282IPR009057Homeodomain-like
SMARTSM007174.0E-8223276IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-16225284IPR009057Homeodomain-like
CDDcd116609.92E-21225275No hitNo description
PfamPF002496.2E-6226274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGLTNSCDIP ASSFIIKEGK FVEESSPNVE GMSTAPTAET LNIECRVSPT TYSLENKDLH  60
HSEDMELDHG SEGQHDERAA VKRVRKPTRR YIEELSEVES REYVQKVVSL NKNTISDSIS  120
ANSIARPIKK VYSDGGRTVI TRLDSLGGSG FQVPCVSRVR RSRPRKDVVG LVFALPEKDQ  180
NPSVTVTDEV EKTLEQKQTA SDNVSDDNTA VVPTTKGGMR RKHHRAWTLV EVIKLVEGVS  240
KCGAGKWSEI KKLSFSSYSY RTSVDLKDKW RNLLKASLVQ TPVDEGISSR KHASISIPAQ  300
ILLRVRELAE MHAQIPPSSH GQGKLGGGGV GESMHEMSSS TVCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRSRPRK
2159166RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462322.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X3
RefseqXP_016902835.10.0PREDICTED: uncharacterized protein LOC103500701 isoform X4
TrEMBLA0A1S3CGM90.0A0A1S3CGM9_CUCME; uncharacterized protein LOC103500701 isoform X3
TrEMBLA0A1S4E4D20.0A0A1S4E4D2_CUCME; uncharacterized protein LOC103500701 isoform X4
STRINGXP_008462318.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-46TRF-like 6