PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024327P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 374aa    MW: 40937.8 Da    PI: 10.2931
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024327P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.1e-1671158186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ r+ +qCk++++ ++k+yk +k+    +  +  s++p++d+l+
  MELO3C024327P1  71 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKITAG--GGPSKWPFYDRLD 158
                     7*************************************87666677899**********************9997..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2769160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKEDDEIQSY PSPGSGSPAS PISNGRITVT VAAVAPPPPP PSSQNMITLA LPNQQTKGGG  60
GGSGGGGRED CWSEGATSVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS REDYTKIPRT  120
DIQCKNRIDT VKKKYKTEKA KITAGGGPSK WPFYDRLDQL IGPTSKNVAS TAGVATTVNP  180
PLHQNQKVPV GIPVVNRSLI PFQAHHNHGH QQQSKGTKAQ KIQYHKRPRT TDSDSSGSDR  240
ETSPTSSDSY LQGKFRRKNV RVQKEAVNPN LGKTEKGKNG SREKGWGNAV SELAQAILKF  300
GEAYEQAESS KLQQVVEMEK QRMKFAKDLE LQRMQFFMKT QLEISQLKHG RRVVAAGNHH  360
CSNNNNSNSD SSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15667KGGGGGSGGGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462265.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-102ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S3CH310.0A0A1S3CH31_CUCME; trihelix transcription factor ASIL2
STRINGXP_008462265.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-72sequence-specific DNA binding transcription factors