PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C024256P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 739aa MW: 82343.3 Da PI: 6.2901 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.8e-20 | 83 | 138 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ ++t+eq++e+e lF+++++p++++r++L++klgL+ +q+k+WFqNrR++ k MELO3C024256P1 83 KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIK 138 678889**********************************************9877 PP | |||||||
2 | START | 195.5 | 2.5e-61 | 259 | 477 | 5 | 205 |
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 +a +e+vk+ ++eep+Wv+s+ e +n+d+++++++ ++ +++ea+r++gvv+++l++lv++++d+ qW+e+++ ka+t+ev+ +g MELO3C024256P1 259 RAIEEVVKMGDSEEPLWVRSVetgrELLNYDVYRKELAVGNErgkREVEASRETGVVFADLHRLVQSFMDVV-QWKEMFPsmisKASTMEVVFNG 352 6889********************999**********88887999***************************.********************** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ga+qlm+aelq+l+p+ p R+ fvR+++ql+ g+wv++dvS+d + sss R++++pSg++i+++s+gh+kvtwveh+++ + + MELO3C024256P1 353 dgnnrdGAVQLMFAELQMLTPTIPpREIFFVRSCKQLSPGKWVVADVSIDKVGDHLDSSSASRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKII 447 **********************999***************************99877************************************** PP X.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 177 p.hwllrslvksglaegaktwvatlqrqce 205 h ++r +v+sgl++ga +w++tlq +ce MELO3C024256P1 448 GlHTIYRTIVNSGLIFGATHWMSTLQMHCE 477 *****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-20 | 71 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.46E-18 | 72 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-18 | 82 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.39E-18 | 83 | 138 | No hit | No description |
Pfam | PF00046 | 1.4E-17 | 83 | 138 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.757 | 246 | 481 | IPR002913 | START domain |
CDD | cd08875 | 1.13E-93 | 250 | 477 | No hit | No description |
SuperFamily | SSF55961 | 3.23E-29 | 253 | 477 | No hit | No description |
SMART | SM00234 | 2.9E-56 | 255 | 478 | IPR002913 | START domain |
Pfam | PF01852 | 4.4E-49 | 259 | 477 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.5E-8 | 306 | 476 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.33E-10 | 521 | 725 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MAVVMSDNHA SRRLKTLPSS PALSLTLAGV FENAGPMDVE ADTTGRRDDS CSDNSEPAGS 60 RSAEDLGVDP DDEDEDKLQG NTKKRKNRHT SEQIREMEML FKESPHPDEK QRQQLSEKLG 120 LSCKQIKFWF QNRRTQIKAI HERHENALLK GEMEKLREEN QAMREMISKS SCPKGCCSAS 180 TNSLDPVFNT SDQQQQQLVT EIARLKAEVE RLRTALDKYA PAETENSKEE GGIERGRNLE 240 KSKSILGLEK GRVMLIGKRA IEEVVKMGDS EEPLWVRSVE TGRELLNYDV YRKELAVGNE 300 RGKREVEASR ETGVVFADLH RLVQSFMDVV QWKEMFPSMI SKASTMEVVF NGDGNNRDGA 360 VQLMFAELQM LTPTIPPREI FFVRSCKQLS PGKWVVADVS IDKVGDHLDS SSASRCRKRP 420 SGCIIQDTSD GHCKVTWVEH WECHKIIGLH TIYRTIVNSG LIFGATHWMS TLQMHCEWQV 480 FFMATNVPMK DSTGITTVGG RKSVLRLAQR MTSSIYQAIG ASSSHTWTKV QSKIGETIRI 540 ASRKNLKNPH EPTGLILCAV ASVWLPVSPK ILFEFLIDEA RRPEWDVMLS GGQVEMLANF 600 AKGQNRGNAV TIQAIKSDES NKWILQDSLT NEYESTVVYA EVDMNSMKSV MAGFDSGNIT 660 TLPTGFSILP DGHPTRPLVI SSSKEERETG GSLLTVASQI LVSPSPTAET TSQSVEYVNN 720 IISHTLENIK ASLQGEDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 0.0 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462169.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A1S3CGV0 | 0.0 | A0A1S3CGV0_CUCME; homeobox-leucine zipper protein GLABRA 2 | ||||
STRING | XP_008462169.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4714 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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