PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024229P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 386aa    MW: 44608 Da    PI: 4.5513
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024229P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.4e-15151235286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e+ +L++a  e+  + +r++l+   W+ev++k++e  ++ r+ +qC+++++ l+k+ykk+k  + +   + +s+++yf++++
  MELO3C024229P1 151 WNEHETVVLLDAWGERFLQHGRKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKSKSTEM-GGPTSKWVYFKKMD 235
                     *************************************762678*************************997.566669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-22150237No hitNo description
PROSITE profilePS500906.237151208IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-4166220IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDNGEERYPI SKRYSVNHRE NFGSLPRQKI PFRDPSYSRP VSNQYVDEDV EDDEEEDGLG  60
EEEDENYQNN GFAHTSEEVD DGDDEDDFDM DEDIKQNNTV KLDDADLERH PKKRRLKNLI  120
SNYELAPRMP PPSSTPAQKS FVGGRNSLTD WNEHETVVLL DAWGERFLQH GRKSLRSEEW  180
QEVAEKVSEV SKIDRTDTQC RNRLDTLKKK YKKEKSKSTE MGGPTSKWVY FKKMDMLMSS  240
PPNQGGLSCG LDSGEYVFMN PRAYLNRANG LDEMRDSPDN SESDDCEDDE LDGLPPKKRI  300
YGRNNEDSSS FRMLADSIHK FSEIYEKIES SKRHQMMELE KMRMDFLRDL ELQKRQIMER  360
AQAEIAKLRQ GDDEEYGASA KSASG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117PKKRRLKN
2111116KKRRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462144.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1S3CG670.0A0A1S3CG67_CUCME; trihelix transcription factor ASIL2
STRINGXP_008462144.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-69Trihelix family protein