PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024209P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 442aa    MW: 48467.7 Da    PI: 6.3517
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024209P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-29110167260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkg+ f rsYYrCt+++C+vkk++er++ d+k+++++Y g+H+h+k
  MELO3C024209P2 110 EDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTH-DGKITDTVYFGQHDHPK 167
                     7***************************************9.***************85 PP
2WRKY106.61.3e-33293350158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpkvv +tYeg+H+h
  MELO3C024209P2 293 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDH 350
                     58*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2698168IPR003657WRKY domain
PROSITE profilePS5081122.699104168IPR003657WRKY domain
SuperFamilySSF1182902.88E-24105168IPR003657WRKY domain
SMARTSM007742.7E-32109167IPR003657WRKY domain
PfamPF031068.8E-23110166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-35279352IPR003657WRKY domain
SuperFamilySSF1182908.11E-29285353IPR003657WRKY domain
PROSITE profilePS5081135.29288353IPR003657WRKY domain
SMARTSM007741.7E-38293352IPR003657WRKY domain
PfamPF031062.0E-26294350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVSTGDQLEN GVDSDQLDHE NSSDSQPQAS QDDPGGTNAS KSDHKCTGAS SNTLEEAVKQ  60
PEVTIALVDR GDISNIVTEK VTHKPITAEQ NPLSVLKVCI TSSIREKVSE DGYNWRKYGQ  120
KLVKGNVFVR SYYRCTHPTC MVKKQLERTH DGKITDTVYF GQHDHPKPQP HIPIPVGVVT  180
MVEEKLGEHA SGNSQDKTST TLSPTPQQTE LTDMRQPPSV IASDNVKDEA SKRSRTNDEA  240
SKRSRTIDEI DSDDTPDLKR EKKRCNIDVT TVADKSIVES RVVVQTPSEV DIVNDGYRWR  300
KYGQKFVKGN PNPRSYYRCS SPGCPVKKHV ERASHDPKVV LTTYEGQHDH VLPPIRTVTL  360
NSVGSTTAHS DETKPKPVST VVHASKDPQS DSSSEGKLIE ENGKLNATET SDDIILDGVV  420
VNPSPGVASE QNKQLKVAIE S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-36108354175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840340.0GU984034.1 Cucumis sativus WRKY protein (WRKY49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462091.10.0PREDICTED: WRKY transcription factor 1 isoform X2
SwissprotQ9SI374e-82WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A1S3CGN70.0A0A1S3CGN7_CUCME; WRKY transcription factor 1 isoform X2
STRINGXP_008462088.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-85zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]