PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024179P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 408aa    MW: 44473.5 Da    PI: 5.1797
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024179P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ + +++ + +C+++   lC +C  + H+       H++
  MELO3C024179P1  4 ICDFCAQQRSIVYCRSDAAALCLSCDRNVHSAnalsrrHSR 44
                    7*****************************65677777766 PP
2CCT62.41.5e-21350393144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a++RYkeK+k RkFeKk+rY+sRK++A++R RvKGrFvk+ 
  MELO3C024179P1 350 RSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAG 393
                     889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.727147IPR000315B-box-type zinc finger
CDDcd000212.96E-6447No hitNo description
SMARTSM003361.3E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8454390IPR000315B-box-type zinc finger
CDDcd000210.004574776No hitNo description
PfamPF062031.8E-16350392IPR010402CCT domain
PROSITE profilePS5101715.329350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICDFCAQ QRSIVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC  60
PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSGCPTAA ELSSIWSFVL DLPSGSDACE  120
QELGLMSIAE NSAVNAWGPN DKAGQNVSGV DETNEFSSVD KSIWYGSSSM PHIMDQPITM  180
DATSPKLHYP GTKGPELDIE DDLYESLNMD EDSLNIENYE ELFGVSLSYS EELLENGGID  240
SLFRMKNLSA AKSGCPGGAA AEGASVSFVN NVMQPASSNA ASADSVMSAK TEPVLCYNNK  300
QEHSGLSFSG MTGESSAGEH QDCGASSMLL MGEPPWCSMA TETSFQSSNR SDAVMRYKEK  360
KKARKFEKKV RYASRKVRAD TRRRVKGRFV KAGEAYDYDP LSQTRSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462024.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_008462025.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_008462026.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_008462027.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_008462028.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-138COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S3CGH40.0A0A1S3CGH4_CUCME; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_008462024.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-130CONSTANS-like 9