PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024174P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 489aa    MW: 55201.4 Da    PI: 5.96
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024174P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09430486148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+rW+ eE+e l ++v+++ +       W++I +        +Rt+ ++k++w+++l
   MELO3C024174P1 430 RMRWSVEEEEMLREGVQKFSSTanknlPWRKILEFGRhifdDTRTPVDLKDKWRNLL 486
                      89*******************************9999******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.6E-838103IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.44E-750108IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002497.2E-655100IPR001965Zinc finger, PHD-type
PROSITE patternPS0135905699IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS512949.989425488IPR017930Myb domain
SuperFamilySSF466892.54E-10428486IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-9429486IPR009057Homeodomain-like
SMARTSM007171.3E-7429488IPR001005SANT/Myb domain
PfamPF002497.1E-8430486IPR001005SANT/Myb domain
CDDcd116601.40E-13432486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRIKNRRGGR CKPSRPSATS TTPSPMASPP LPDQEASNKE TNDVLDKIDC FQKDSCTRCD  60
QSGDLLVCTE PGCPIALHEL CMSCEPSFDE DGRFYCPYCS YKRALIRVNE LRRKTMVAKR  120
ALSDFIDTRM VGGGNSPRMG EAGKKKSDDI STCGVDVDLP NYGSHLCNES SRDQDIQVEQ  180
NQSNEGENFA RAEGDVQPTS MVGVNSEIHD GPIVSNVSND SHSAPVVQPC EDKMDEETHE  240
AETSGTHQVE SLEDKDDGKT MDEEILRPID DIQDDRIAED QGQLEIPGAY HDGEETAQEP  300
QDKDDGREQI QPDNERMLEN IIPASVDNDL KNETTAKKRR FKTKANRRTD LQNVNSPRKS  360
LRLQTPEVKK SPRIRTPEPR NNSPHIQTPK PQKDHAIKIE KVSVSRNLKP QSASHNHFKS  420
LDFHGGKRKR MRWSVEEEEM LREGVQKFSS TANKNLPWRK ILEFGRHIFD DTRTPVDLKD  480
KWRNLLGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336341KKRRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462017.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X2
TrEMBLA0A1S3CFV40.0A0A1S3CFV4_CUCME; protein CHROMATIN REMODELING 4-like isoform X2
STRINGXP_008462016.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.18e-07TRF-like 5