PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024155P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 432aa    MW: 46932.4 Da    PI: 7.7064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024155P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16219265455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+k Lq
  MELO3C024155P1 219 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 265
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-21213281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-18218269No hitNo description
PfamPF000107.1E-14219265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-21219274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASWLNYPLV EDHNFCSDLL FPAITAPLCA NPQPDLRPSA TATLTLTPRP PIPPCRRPEV  60
QTSVQFSRNK ATVESEPSNS KVMVRESTVV DSCDTPSVGP ESRASQMARR KLVEVVNGGG  120
VRYEIARGGD GVRGPSVGGD GTGEKEMMTC EMSVTSSPGG SSASAEPACP KLAVDDRKRK  180
GRALDDTECH SEDIEYESAD PKKQLRGSTS TKRSRAAEVH NLSERRRRDR INEKMKALQE  240
LIPRCNKTDK ASMLDEAIEY LKTLQLQVQM MSMGCGMMPM MFPGVQQYLP PPMGMGMGMG  300
MEMGMNRPMM QFHNLLAGSN LPMQAGATAA AHLGPRFPLP PFAMPPVPGN DPSRAHAMNN  360
QPGPMANSVG TQNTTPPSVL GFPDSYQQFL SPTQMQFHMT QPLQNQHPVQ PNTSRPCTSR  420
GPENLENHQS G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461998.10.0PREDICTED: transcription factor PIF1
RefseqXP_008461999.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A1S3CFZ10.0A0A1S3CFZ1_CUCME; transcription factor PIF1
STRINGXP_008461998.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-45phytochrome interacting factor 3-like 5