PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C024138P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 546aa MW: 61094.1 Da PI: 7.9561 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.4e-18 | 7 | 71 | 33 | 99 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++el+v+v+r+ MELO3C024138P2 7 TQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELRVGVRRQ 71 458999*********************************************..3489999****996 PP | |||||||
2 | Auxin_resp | 101.4 | 1.2e-33 | 96 | 175 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+++++k+++++k+ + vGmRfkm+fe+e+s+err++Gt+vgv d++p +W++SkWrsLk MELO3C024138P2 96 ASHAVRTQTYFVVYYKPRT--SQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSP-QWSDSKWRSLK 175 689***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.788 | 1 | 72 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0011 | 1 | 72 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.45E-23 | 2 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-25 | 2 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.2E-16 | 7 | 71 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.19E-13 | 8 | 70 | No hit | No description |
Pfam | PF06507 | 3.1E-31 | 96 | 175 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.2E-11 | 416 | 519 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.7E-12 | 430 | 511 | No hit | No description |
PROSITE profile | PS51745 | 25.474 | 435 | 527 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MSQSTPTQEL AAKDLHGYEW KFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD 60 NGELRVGVRR QARQQSLMPS SVISSHSMHL GVLATASHAV RTQTYFVVYY KPRTSQFIIS 120 LNKYLETVKN GYEVGMRFKM RFEGEESPER RFTGTIVGVG DMSPQWSDSK WRSLKIQWDE 180 PATIQRPERV SPWEIEPFVP SASLNFTHPA IKSKRARPVE IPPPEITSGS APSGFWLQGS 240 TIPHEISQIS GGTNEVQSSN NRVVWALGQR KLDSNSSHCN PIANVEGIWP SPPLNISLNL 300 YPDSTFEREL VQKQPQSSPY SSSVTSKPSS DLIHPDQLEK GSKPDISLGC RIFGIDLKKN 360 SSIVPTNSSI VPTLERRSSC LLMVSDGAPE PVTMAVVTPQ VDAGNLSQHS KEQQLSSELS 420 TKGTQTKHIS NLSSRTRTKV QMQGVAVGRA VDLTTLEGYE DLIDELENVF EIKGELREVN 480 KWSIVFTDDE NDMMLVGDDP WPEFCKMVKR IFIYSSEEVK KMSRESKIVC PSFLDSLDSE 540 RKTES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldw_A | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldw_B | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldx_A | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldx_B | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681793 | 0.0 | LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016902809.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q9XED8 | 1e-166 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A1S4E3K7 | 0.0 | A0A1S4E3K7_CUCME; Auxin response factor | ||||
STRING | XP_008462117.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 1e-167 | auxin response factor 9 |