PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C024087P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 210aa MW: 24045.5 Da PI: 8.9636 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.5 | 1.6e-14 | 125 | 171 | 2 | 48 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++l+r+rr++kNRe+A rsR+RK+a + eLe + Le+eN++L ke MELO3C024087P1 125 AALQRQRRMIKNRESAARSRERKQAHQIELESIASRLEEENERLLKE 171 789****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.0E-11 | 124 | 192 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-12 | 125 | 171 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 126 | 171 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-10 | 128 | 172 | No hit | No description |
CDD | cd14707 | 1.58E-16 | 128 | 175 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.9E-12 | 129 | 173 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 131 | 146 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MKKSNQIFRT ITPASAAAAK FDTINFHNSN VDSLVALIDN RNPLSHLDGE FHTSSPSSVS 60 KTVDDLWRQL KEESVEDLIL NPLSCLKDFD RVYVEDQENV GFGNKVDIRA RGKRRRVAME 120 PMDDAALQRQ RRMIKNRESA ARSRERKQAH QIELESIASR LEEENERLLK EKVLLVILLA 180 RPFTATKCQN VSWCKISVVH IAFFFYLLC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 116 | KRRRV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681796 | 0.0 | LN681796.1 Cucumis melo genomic scaffold, anchoredscaffold00065. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461925.1 | 1e-122 | PREDICTED: G-box-binding factor 4-like isoform X1 | ||||
Swissprot | P42777 | 3e-24 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A1S3CFQ6 | 1e-121 | A0A1S3CFQ6_CUCME; G-box-binding factor 4-like isoform X1 | ||||
STRING | XP_008461925.1 | 1e-121 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-22 | bZIP family protein |