PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023937P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 28885.6 Da PI: 9.326 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.5 | 3.5e-16 | 134 | 188 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++ q Lee F++++++ +++ e A++l+L rqV vWFqNrRa+ k MELO3C023937P1 134 RKKLRLSRRQSAFLEESFKQHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTK 188 6778899**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.1 | 1.8e-36 | 134 | 224 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rls+ q+++LEesF+++++L p++K e+ar+L+l+prqv+vWFqnrRARtk+kq E+++e+Lk+++ +l+++n++L+ke ++Lr +lk MELO3C023937P1 134 RKKLRLSRRQSAFLEESFKQHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTKLKQNEVECEYLKKCCATLTQQNTKLQKELQDLR-ALK 224 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.88E-16 | 126 | 191 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.05 | 130 | 190 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-13 | 132 | 194 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-16 | 133 | 194 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.03E-12 | 134 | 191 | No hit | No description |
Pfam | PF00046 | 1.1E-13 | 134 | 188 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 165 | 188 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.2E-16 | 190 | 233 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MELDLRLGND PSPSSHPTPL HFSLSFSSLE LQHQARNHIH QNHLLLHSLN SPPPPAASAS 60 RPSSPTERSR GKVFTEVISE ATADGGGEIG RRSSKGIVWS IGKNNSEEER EGKSENEEEE 120 EQEEMDMNMI SGGRKKLRLS RRQSAFLEES FKQHHTLYPK QKLEVARRLN LRPRQVEVWF 180 QNRRARTKLK QNEVECEYLK KCCATLTQQN TKLQKELQDL RALKTTHSLF INSPPTTLTL 240 CASCERAVAT PISR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 190 | RRARTKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681835 | 1e-154 | LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064. | |||
GenBank | LN713258 | 1e-154 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461760.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
TrEMBL | A0A1S3CFB9 | 0.0 | A0A1S3CFB9_CUCME; homeobox-leucine zipper protein HOX11-like | ||||
STRING | XP_008461760.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31515 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-53 | homeobox from Arabidopsis thaliana |