PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C023802P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 303aa MW: 32712.4 Da PI: 8.6248 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.5 | 1.6e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ MELO3C023802P1 4 SCNGCRVLRKGCSENCSIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ MELO3C023802P1 99 AVEAVLKGA 107 ***998766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 3.5E-95 | 1 | 299 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.134 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSETAATG 120 DGPPLKAYDI RHVSKDENSV ASNDGGVIRP VKTRCRFKRS SAKAKASKGI ASTVVDESTR 180 PLCSTELNRS SSGESSLSHQ SDSRHLENES KETESMISVE TAEVSPPCPV QSVLFRSEST 240 GRESVAVPIP RSELALELTL GMEPVLRAQH VIPMKKRKIE TDVGLRPKNE TCNTVLGLDF 300 AA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681856 | 0.0 | LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461588.2 | 0.0 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-104 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S3CEU1 | 0.0 | A0A1S3CEU1_CUCME; LOB domain-containing protein 41 | ||||
STRING | XP_008461588.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-100 | LOB domain-containing protein 41 |