PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023772P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 42643 Da PI: 9.98 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 140.3 | 1.6e-43 | 110 | 254 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssas 83 gkkdrhski+T++g+RdRRvRls+++a++fFdLqd+LG+dk+skt+eWL+ ++ +aikel +t +a +++++++ MELO3C023772P1 110 GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSRKAIKELSRTknvgfhggakklslA--AA--SSDVEEEYD-- 198 89*************************************************************888777655543211..11..112222222.. PP TCP 84 nsssg.........kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + + + ++++k s+++ + ++ +akesrakarararert ek++ ++ MELO3C023772P1 199 ----DdkgwelkmkSMLRIDEQEKVSKEKVEIFNLVAKESRAKARARARERTMEKKQVDD 254 ....0223556653333333355555555555566677*****************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-42 | 110 | 251 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.875 | 111 | 169 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.397 | 232 | 249 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MGSSSYNPNP FPCFPSSSSS TTNSYNLPLS IPSLLNFDPS SNNTSTVNFH HQPHQDPLSF 60 LAPYFPIAHF STLTPPETAV INFAVAGNNI QALGDMVVPS APGAGTTGMG KKDRHSKIYT 120 AQGLRDRRVR LSIDIARKFF DLQDMLGYDK ASKTLEWLFS KSRKAIKELS RTKNVGFHGG 180 AKKLSLAAAS SDVEEEYDDD KGWELKMKSM LRIDEQEKVS KEKVEIFNLV AKESRAKARA 240 RARERTMEKK QVDDSKVYGH QKGGAQEVSD HWSKHLNHST ETSNLSMEES SFMNKRKIYA 300 KKFINHDNYT TVKSCRDDEN AETSHWKLLD QMKASKRKWK PSIISGSSQR NLLISIDDIP 360 INLPRNLDTN NSAGYRFAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-14 | 116 | 169 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-14 | 116 | 169 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681856 | 0.0 | LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461599.2 | 0.0 | PREDICTED: transcription factor TCP1 | ||||
TrEMBL | A0A1S3CGD1 | 0.0 | A0A1S3CGD1_CUCME; transcription factor TCP1 | ||||
STRING | XP_008461599.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-29 | TCP family protein |