PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023554P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 324aa    MW: 36290.7 Da    PI: 8.4186
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023554P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.97e-33155211158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +ksrkpylheSRh hA+rR+RgsgGrF
  MELO3C023554P2 155 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKSRKPYLHESRHLHAMRRARGSGGRF 211
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.9E-38153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.152154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-28156211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-24157179IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860159179IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-24188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMPSEPENVD QQVADRAKYL LQSSKYSEPW WHGVGNNTIA GEDAAKTSSA EYLNVTVASG  60
ATQPQANDEN IGKEVQHLKY IPFSTSPPVG EHLDLNSQME LVGHSIYLHL QVLTSYPFSD  120
AQYCQMLTSY GPQATLPRIY GLHHARMPLP LEMEEEPVYV NAKQYHGILR RRQSRAKAEL  180
EKKVIKSRKP YLHESRHLHA MRRARGSGGR FLNTKKPNNV MSNTNREEDI NSGANHSTKP  240
VSEVGSKYMV THEKGIKNTL DEQSRELMTQ NMQITHAFFN GKSNVHGLST YNSQLGDVEG  300
GHLDHPHESM QVNGAPQRAI PIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21155219266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461297.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
RefseqXP_008461299.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
TrEMBLA0A1S3CED90.0A0A1S3CED9_CUCME; nuclear transcription factor Y subunit A-9-like
STRINGXP_008461297.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-34nuclear factor Y, subunit A9