PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023554P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 319aa    MW: 35635.9 Da    PI: 8.4222
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023554P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.96.8e-33150206158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +ksrkpylheSRh hA+rR+RgsgGrF
  MELO3C023554P1 150 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKSRKPYLHESRHLHAMRRARGSGGRF 206
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.9E-38148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.152149209IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28151206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-24152174IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860154174IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-24183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMPSEPENVD QQVADRAKYL LQSSKYSEPW WHGVGNNTIA GEDAAKTSSA EYLNVTVASG  60
ATQPQANDEN IGKEVQHLKY IPFSTSPPVG EHLDLNSQME LVGHSIVLTS YPFSDAQYCQ  120
MLTSYGPQAT LPRIYGLHHA RMPLPLEMEE EPVYVNAKQY HGILRRRQSR AKAELEKKVI  180
KSRKPYLHES RHLHAMRRAR GSGGRFLNTK KPNNVMSNTN REEDINSGAN HSTKPVSEVG  240
SKYMVTHEKG IKNTLDEQSR ELMTQNMQIT HAFFNGKSNV HGLSTYNSQL GDVEGGHLDH  300
PHESMQVNGA PQRAIPIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21150214266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461297.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
RefseqXP_008461299.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
TrEMBLA0A1S3CED90.0A0A1S3CED9_CUCME; nuclear transcription factor Y subunit A-9-like
STRINGXP_008461297.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.19e-35nuclear factor Y, subunit A9