PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023532P6
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 419aa    MW: 46357.2 Da    PI: 8.4133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023532P6genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13354398655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P        K s a++Le+AveYIk Lq
  MELO3C023532P6 354 SIAERMRRTRISERIKKLQELFPDM-----DKTSTADMLELAVEYIKGLQ 398
                     689*********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.272348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14351411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-11352402No hitNo description
Gene3DG3DSA:4.10.280.107.2E-13353408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10354398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP NSLFASLVDG  60
TEGFNSSNNG GGSREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVR  120
QQNGFCNQSS SMVNTSSVDS GGRAQIGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS  180
PAGFFSHLTA ENGNTTREVD KFGTCNRKDV NAAYPSTRIG SQMNLSGHSF GSNHMPPIAE  240
EENKSIGIVS SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DIKRGRDNNG HAFSTSIVLK  300
TQNADSGNNI RGLAHHLSLP ISFNKDPVEK YLRFQEPVPH QIRAKRGCAT HPRSIAERMR  360
RTRISERIKK LQELFPDMDK TSTADMLELA VEYIKGLQRQ VKTLTDTKAK CTCSCSSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461268.10.0PREDICTED: transcription factor bHLH130-like isoform X2
RefseqXP_008461269.10.0PREDICTED: transcription factor bHLH130-like isoform X3
TrEMBLA0A1S3CEB70.0A0A1S3CEB7_CUCME; transcription factor bHLH130-like isoform X2
TrEMBLA0A1S3CER30.0A0A1S3CER3_CUCME; transcription factor bHLH130-like isoform X3
STRINGXP_008461266.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-51bHLH family protein