PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023532P5
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 405aa    MW: 44707.3 Da    PI: 8.5557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023532P5genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13339384655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P      +k  s a++Le+AveYIk Lq
  MELO3C023532P5 339 SIAERMRRTRISERIKKLQELFPDM----DKQTSTADMLELAVEYIKGLQ 384
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14336397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-11337388No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13338394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKKYPDFMDC DSTNNHHSQQ EHNNSGGLMR YCSAPNSLFA SLVDGTEGFN SSNNGGGSRE  60
DYRFIRSSSP EVEVILSRFM ASCNGKFDSG SGERTVKEET GEPVRQQNGF CNQSSSMVNT  120
SSVDSGGRAQ IGNSYGVMNS SDFDNSMQSQ LGARNCSNLF RQSSSPAGFF SHLTAENGNT  180
TREVDKFGTC NRKDVNAAYP STRIGSQMNL SGHSFGSNHM PPIAEEENKS IGIVSSSRHR  240
QKANSGDRLQ TDDFLNSSWD NSAMRDIKRG RDNNGHAFST SIVLKTQNAD SGNNIRGLAH  300
HLSLPISFNK DPVEKYLRFQ EPVPHQIRAK RGCATHPRSI AERMRRTRIS ERIKKLQELF  360
PDMDKQTSTA DMLELAVEYI KGLQRQVKTL TDTKAKCTCS CSSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461268.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLA0A1S3CEB70.0A0A1S3CEB7_CUCME; transcription factor bHLH130-like isoform X2
STRINGXP_008461266.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-54bHLH family protein