PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023532P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 46485.3 Da PI: 8.4133 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.3e-13 | 354 | 399 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P +k s a++Le+AveYIk Lq MELO3C023532P2 354 SIAERMRRTRISERIKKLQELFPDM----DKQTSTADMLELAVEYIKGLQ 399 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.24 | 348 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-14 | 351 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-11 | 352 | 403 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 353 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 354 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-10 | 354 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP NSLFASLVDG 60 TEGFNSSNNG GGSREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVR 120 QQNGFCNQSS SMVNTSSVDS GGRAQIGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS 180 PAGFFSHLTA ENGNTTREVD KFGTCNRKDV NAAYPSTRIG SQMNLSGHSF GSNHMPPIAE 240 EENKSIGIVS SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DIKRGRDNNG HAFSTSIVLK 300 TQNADSGNNI RGLAHHLSLP ISFNKDPVEK YLRFQEPVPH QIRAKRGCAT HPRSIAERMR 360 RTRISERIKK LQELFPDMDK QTSTADMLEL AVEYIKGLQR QVKTLTDTKA KCTCSCSSQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 0.0 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461268.1 | 0.0 | PREDICTED: transcription factor bHLH130-like isoform X2 | ||||
TrEMBL | A0A1S3CEB7 | 0.0 | A0A1S3CEB7_CUCME; transcription factor bHLH130-like isoform X2 | ||||
STRING | XP_008461266.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-54 | bHLH family protein |