PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023515P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 703aa MW: 77499.4 Da PI: 10.3799 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 10 | 62 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 W t+E++ll++avk++G ++W++++ +++ + t+ +c +++q+++ MELO3C023515P1 10 TWGTWEELLLACAVKRHGFKDWNSVSMEVQarsslphLLTTARNCELKFQDLK 62 6*****************************99999998889999999999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.7E-4 | 7 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.69E-5 | 10 | 62 | No hit | No description |
Pfam | PF00249 | 2.3E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.20.920.10 | 2.1E-13 | 317 | 429 | IPR001487 | Bromodomain |
SMART | SM00297 | 2.2E-12 | 321 | 430 | IPR001487 | Bromodomain |
CDD | cd04369 | 7.68E-12 | 330 | 425 | No hit | No description |
SuperFamily | SSF47370 | 4.71E-14 | 330 | 430 | IPR001487 | Bromodomain |
Pfam | PF00439 | 3.6E-9 | 334 | 415 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.953 | 340 | 411 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MAESEQITAT WGTWEELLLA CAVKRHGFKD WNSVSMEVQA RSSLPHLLTT ARNCELKFQD 60 LKRRFTSFQN DAVLNHNASG IADKLDTALP WVDELRKLRV AELRREVQRY DVSINSLQLK 120 VKKLEEEREQ GVNDREASTG KPDLKTESRE RRSENDKKHF GEPDHRSGPN GTVTKPPPVP 180 GEDSDREDFS VNQSNSTGSK SGNPKSTAEI AKSETKPDFT GSYRPEQNRR TVEPAGPQSD 240 DGSTDTVVKN PTCDISETKK KETQRVDDSS ELADSEAQSH GGGTTTRESS EVQSSASLTG 300 RMKRKRLLRN EISGGSSGNE PRRSAGIKSR RFDEVLQLIR AHKHGSLFES RLQSQETEEY 360 KGMVRQHLDL EIVQTKINSG SYSSSNLAFY RDLLLLFNNV VTFFPKSSKE AVAACELRLL 420 VSNEMKKSLR VAQTDPLPEV VDSPPTIPSQ SKGPDLEGSQ ALLAKQKSSV PIVVCRKRSK 480 ISNPSTTGTG EKGDRSNDDE KPAADLKSSI KIVSNLVEED TTKDSKVKEK PTTGARSMRR 540 SNDSATNSSG PSSSKKQNIT SRWKPSSANE TEIPTPDKKK SETVALEKKR SAADFLKRIK 600 QNSPAETTKR NGRGGSSGGV GNATPEQKKG NSKNDKAKER VSSTMKQSND KKRPKEDASP 660 SKRSVGRPPK KAAEAEPPTP IKRAREGGGK EPLKRPRKKS KR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 693 | 701 | KRPRKKSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 0.0 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461248.1 | 0.0 | PREDICTED: uncharacterized protein LOC103499890 | ||||
TrEMBL | A0A1S3CFH2 | 0.0 | A0A1S3CFH2_CUCME; uncharacterized protein LOC103499890 | ||||
STRING | XP_008461248.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1870 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 1e-105 | DNA-binding bromodomain-containing protein |