PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023409P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 536aa MW: 59802.3 Da PI: 6.2407 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.4e-10 | 355 | 392 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ +LA+++gLt +qV +WF N R + MELO3C023409P1 355 FEHflHPYPKDSEKLKLARQTGLTRNQVANWFINARVR 392 664459******************************88 PP | |||||||
2 | BELL | 98.3 | 6.1e-32 | 219 | 290 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+l++k +kLlsll eVd+rYkqy++qlq+++ssF++vag g+a+ Yt+l ++iS hFr L+dai qi MELO3C023409P1 219 ERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQMLASSFDMVAGRGAAEFYTALPHQTISCHFRRLRDAINAQI 290 799******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-33 | 137 | 288 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-38 | 144 | 286 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.438 | 333 | 396 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.31E-13 | 336 | 397 | No hit | No description |
SMART | SM00389 | 1.5E-9 | 336 | 400 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.38E-17 | 337 | 403 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 339 | 402 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.7E-17 | 353 | 392 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MLGDPKLGPS CQEQQPLCSG NLMMFMNQDP SCRDYSEILS GVSSNYVETV GDRSNVEMAF 60 IPPVVGILDE SNFQCQGVSL SLSTHSPSVV SMSSFPHQYQ TPAMVSSFIN APPSILEKRP 120 NPKSCISDVK NGMYVALGSG YSMLNSVYIE AAQQLLDEMV SIREALKELK SKKLKASNGL 180 GVDSCRENEG GSNDLTGEMC GNAREVSIAN PSSDLSPSER QDLKNKNSKL LSLLGEVDRR 240 YKQYYQQLQM LASSFDMVAG RGAAEFYTAL PHQTISCHFR RLRDAINAQI EVTRRTLGEQ 300 DALHSGQEGI PRLRFVDQHL RQQRALQHLG VTPHSWRPQR GLPESSVSIL RAWLFEHFLH 360 PYPKDSEKLK LARQTGLTRN QVANWFINAR VRLWKPMVEE MYKEEFGDSN IDIKSSPENA 420 SKASWNNSLF SEDRGGDKLH DSTKSVANNG ERILYRQCAT DEMINSSNFT MGGGDVSLAL 480 ELKHCEGDEF GMFGNNNNRM VGSVELEAQD FPCLEPERHH QCRLTSSNML HDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-17 | 342 | 400 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-17 | 342 | 400 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-17 | 342 | 399 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-17 | 342 | 399 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-17 | 342 | 400 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-17 | 342 | 400 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 0.0 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461100.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A1S3CDG8 | 0.0 | A0A1S3CDG8_CUCME; BEL1-like homeodomain protein 7 | ||||
STRING | XP_008461100.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-90 | BEL1-like homeodomain 6 |