PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023350P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 335aa MW: 36360.4 Da PI: 6.0642 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.9 | 5.9e-18 | 253 | 286 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C + kTp+WR gp+g ktLCnaCG++y++ + MELO3C023350P1 253 CSHCLVQKTPQWRTGPNGAKTLCNACGVRYKSGR 286 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.7E-70 | 6 | 330 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 5.8E-16 | 247 | 297 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-14 | 248 | 310 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-14 | 251 | 284 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.451 | 251 | 283 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.68E-13 | 252 | 309 | No hit | No description |
Pfam | PF00320 | 6.3E-16 | 253 | 286 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 253 | 278 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEFLEAKALK SSFHWELAMK SAQQDALVEE VWCLNGANLV SGEDFEIEEF LNFSNGDLEH 60 GSSLRPQEDD DCEEFEKNRF SLSSNSNQTG GSPVVGDEDS KSLLAVELAF PGDSLTDLEW 120 VSQFVDDSSS EFSCPAVAFN RSEPEKKLTG TVISCLPTFF PVRPRTKRSR QSRQAKSAGS 180 SLNQSPSSSS SSTSSGVSSA APWFIFSDAG ENVDSLNVTG EPPKKQRKKP SSPSPSSTGL 240 LPTGSTGQIP RRCSHCLVQK TPQWRTGPNG AKTLCNACGV RYKSGRLFPE YRPALSPTFC 300 SGVHSNSHRK VLEMRKTKEV SQPATELAPM VPSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 229 | PKKQRKKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681912 | 0.0 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461014.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Refseq | XP_008461015.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
TrEMBL | A0A1S3CE81 | 0.0 | A0A1S3CE81_CUCME; GATA transcription factor | ||||
STRING | XP_008461014.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 3e-50 | GATA transcription factor 5 |