PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023333P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 676aa    MW: 74284.4 Da    PI: 6.4307
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023333P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094194561954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  MELO3C023333P1 419 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 456
                     664559******************************88 PP
2BELL124.54.2e-40281352172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e+q+lq+k +kLl +l+eVd+rY+qy++q+q+v+ssF+++ag+g++kpYt+lAl++iSrhFrcL+daia+q+
  MELO3C023333P1 281 EKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQV 352
                     6899*****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-58195350IPR006563POX domain
PfamPF075266.0E-51201349IPR006563POX domain
PROSITE profilePS5007112.212397460IPR001356Homeobox domain
SMARTSM003891.0E-9400464IPR001356Homeobox domain
CDDcd000866.24E-13400461No hitNo description
SuperFamilySSF466892.4E-17401468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-29403466IPR009057Homeodomain-like
PfamPF059204.6E-18417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATYFSSSNN ERDTTPILYS RGSLLGSYEE TTILPRNMMM HVNSGTYMDS LPSQAQNGCG  60
QITSVGAAGT TQQQQEFLSN LGGSQIAEHD FNTWREDRSE MLGANLMRGP TNVLHGGQNL  120
QGQGLSLTLS TQIPSIPYRN SDMGLTSFLS PNPTNSGEDG CRNGASRDEQ LRNGENLPPN  180
FQELAKGEIS QYSMSTIART MPNSKYLKAA QQLLDEVVNV RKALKRPNNE RNQSSPEHET  240
KSAKNGDAGT KNDSSMLTAS GTSSNPQETG SNSTCELSHA EKQDLQNKLT KLLYMLDEVD  300
RRYNQYYHQM QIVVSSFDVI AGCGASKPYT ALALQTISRH FRCLRDAIAG QVRATRKSLG  360
EHENSGSDKG VGITRLRYVD QQLRQQRALQ QLGMIQQHAW RPQRGLPENS VSILRAWLFE  420
HFLHPYPKDS DKIMLARQTG LTRSQVSNWF INARVRLWKP MVEEMYKEEI GSVDMDSISS  480
SENAGKATKG DNKTFEDDKE EDLQQSASST ATERCSAGDI IDLKSDQVSN LGNSCSNRVA  540
SFQNGAHIEA RNELAKPNDE LRPNVNNSSF FPDAIVHSQG ESDRFMAAAA AYHMSELGRF  600
GTVGGVSLTL GLQHCEGGGL PLPAGTHHGF ATMRGDDMYN AAASSLGETV HFECVNSGNP  660
QPRFGPSHLY HDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16406464563Homeobox protein Meis2
4xrm_B3e-16406464563Homeobox protein Meis2
4xrs_A2e-16406463158Homeobox protein Meis1
4xrs_B2e-16406463158Homeobox protein Meis1
5bng_A3e-16406464159Homeobox protein Meis2
5bng_B3e-16406464159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460982.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_008460983.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_008460984.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_008460985.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A1S3CDP80.0A0A1S3CDP8_CUCME; BEL1-like homeodomain protein 7
STRINGXP_008460982.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-118BEL1-like homeodomain 6