PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023227P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 41987.3 Da PI: 6.6403

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023227P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58	1.2e-18	9	52	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k i+n+ r++tf kR++ +l KA+ELS+LCd++v+v + ++++ MELO3C023227P1 9 KLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQ 52 569**************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.217	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-18	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.61E-22	2	90	No hit	No description
SuperFamily	SSF55455	7.72E-20	2	101	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-17	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MGRGKLSMKL ISNEKSRKTT FHKRKASLLR KAYELSTLCD VRVCVFVHGP NQSNDQSPLQ 60 LHTWPPCPDE VNSMIASYKT NCLHKRARKA FGLIDFFSER KKKVETDMSK LRKDVAEARF 120 TKWDERLDHL LEDQLRVLMM ELDSKIEIAK KRIEIETECY NVEEGTSVES SQTLNANMKH 180 KQVMGFDPEE ESTNYGMFGI RSSMEQTQGT MPFHQQYHHQ QQLQTMAQSC LQMDHEIETL 240 SPFLFGSNGS APQFQLSCGS NNNNNNNCFQ NYPHSFYNDP TNGMIMENTQ SYSSMCHYGV 300 PFGTQSVVPI SYMQMQQLTG ADDQMMMGYA SSSQMPLPNS ASSQVINDQF DFYNSYEYFM 360 KPNSF*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MGRGKLSMKL ISNEKSRKTT FHKRKASLLR KAYELSTLCD VRVCVFVHGP NQSNDQSPLQ  60
LHTWPPCPDE VNSMIASYKT NCLHKRARKA FGLIDFFSER KKKVETDMSK LRKDVAEARF  120
TKWDERLDHL LEDQLRVLMM ELDSKIEIAK KRIEIETECY NVEEGTSVES SQTLNANMKH  180
KQVMGFDPEE ESTNYGMFGI RSSMEQTQGT MPFHQQYHHQ QQLQTMAQSC LQMDHEIETL  240
SPFLFGSNGS APQFQLSCGS NNNNNNNCFQ NYPHSFYNDP TNGMIMENTQ SYSSMCHYGV  300
PFGTQSVVPI SYMQMQQLTG ADDQMMMGYA SSSQMPLPNS ASSQVINDQF DFYNSYEYFM  360
KPNSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681912	0.0	LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460878.1	0.0	PREDICTED: MADS-box protein SOC1-like
TrEMBL	A0A1S3CDG6	0.0	A0A1S3CDG6_CUCME; MADS-box protein SOC1-like
STRING	XP_008460878.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-20	M-type_MADS family protein