PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022945P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GeBP | ||||||||
Protein Properties | Length: 205aa MW: 24174.2 Da PI: 6.5393 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 35.7 | 2.3e-11 | 26 | 118 | 7 | 97 |
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk........aksgkepsfskehdqkifelsk 93 ws+ e+ lL+ l++f++k+ ++fy f+++ ++vsk q+++Ki++LK + +++ + +k ++ + +++ ++ fels+ MELO3C022945P1 26 WSKGEELNLLKKLVEFNSKNI-----SREEFYPFLRNGSLAEVSKIQIFDKIQQLKSEYLENKLElrkmrkrnVKL-EDDDDYNDKRDEGFELSN 114 ****************66554.....5799*****************************98876643232222222.2223334444689***** PP DUF573 94 kiWg 97 ++Wg MELO3C022945P1 115 QLWG 118 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.4E-9 | 26 | 118 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEEEKERRKS SLGSEKKKRR KSLFEWSKGE ELNLLKKLVE FNSKNISREE FYPFLRNGSL 60 AEVSKIQIFD KIQQLKSEYL ENKLELRKMR KRNVKLEDDD DYNDKRDEGF ELSNQLWGEV 120 DETERASNSK ALEVCSRNYY EGFFESCGLD VQLFDPSFHD ATKKDIDHLF NLEHHVILSK 180 AKLTAQILQL KYDLIQARVN NPTN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 20 | RRKSSLGSEKKKRRK |
2 | 15 | 19 | KKKRR |
3 | 15 | 20 | KKKRRK |
4 | 16 | 20 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681910 | 0.0 | LN681910.1 Cucumis melo genomic scaffold, anchoredscaffold00056. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A0KPQ5 | 4e-86 | A0A0A0KPQ5_CUCSA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31057 | 2 | 2 |