PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022932P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 676aa MW: 75109.4 Da PI: 6.4295 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70 | 3.1e-22 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + MELO3C022932P1 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218 99****************************964333..4459************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r MELO3C022932P1 219 NGELRVGVRR 228 999*****97 PP | |||||||
2 | Auxin_resp | 104 | 1.8e-34 | 254 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d + W nS+WrsLk MELO3C022932P1 254 ASHAISTGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLK 336 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.89E-43 | 117 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-39 | 124 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-20 | 126 | 228 | No hit | No description |
SMART | SM01019 | 6.3E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-20 | 128 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.194 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.8E-33 | 254 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.6E-6 | 550 | 586 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 28.967 | 550 | 643 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.57E-11 | 552 | 627 | No hit | No description |
Pfam | PF02309 | 5.7E-6 | 597 | 640 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MSFSAASNLP SGGPHSGPSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM 60 HQGLEQQMPS FNLPSKILCK VVNVVLRAES DTDEVYAQIT LLPESNQNEV TSPDPPLPEP 120 TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGSQWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSTFLVS LNKYLEAQNH KLSVGMRFKM 300 RFEGEEVPER SFSGTIVGLG DNASPGWANS EWRSLKVQWD EPSSILRPDK VSAWELEPLV 360 ASNPLSSQPT QRNKRPRPTV LPSSSPDATV LGGWKPTVES SAFSYTEPQR ARDLYSSPKF 420 STAASNSLGF NANGAVSSNT YWCNTNRVEN IMDTSSHGAN REPVEKKQNS RNGCRLFGIQ 480 LLGNSNVDEA SPVSTPKMVG EDRLVSPVDS EFEQHSEPSN IHRSDIPSIS CDADKSCLIS 540 PLESQSRQIR SCTKVHMQGI AVGRAVDLTR FNQYDDLLRK LEEMFDIEGE LCGSLKKWQV 600 VYTDDEDDMM MVGDDPWNEF CSMVRKIFIY TTEEVKRLSP KIKLPLGGEA KLSKPDSDMI 660 ANHTEDQSSI VGSDC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 359 | 2 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 359 | 2 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 359 | 2 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 373 | 377 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323414 | 0.0 | KU323414.1 UNVERIFIED: Trichosanthes dioica clone TdARF_12 auxin response factor 1-like mRNA, partial sequence. | |||
GenBank | KU323427 | 0.0 | KU323427.1 UNVERIFIED: Trichosanthes dioica clone TdARF_35 auxin response factor 1-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460595.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_016902572.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1S3CCX0 | 0.0 | A0A1S3CCX0_CUCME; Auxin response factor | ||||
STRING | XP_008460595.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6802 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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