PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022593P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 721aa    MW: 80392.1 Da    PI: 5.4975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022593P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.4e-07120142427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G C  GdrC F Hgp
  MELO3C022593P1 120 VPCIFFQK-GLCLKGDRCAFLHGP 142
                     69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.7E-112983No hitNo description
SMARTSM003560.00182956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5682957IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.465985IPR000571Zinc finger, CCCH-type
SMARTSM003560.216184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065116143IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5116142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4120142IPR000571Zinc finger, CCCH-type
PfamPF146080.024121141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MVGGGPQVLE QPPQSLPQST SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSSIPS APVNSSKQAV  120
PCIFFQKGLC LKGDRCAFLH GPPPVQTNKV PQMGSNAQAG EPPSVKKVSG GTQRNSQEQK  180
IPQANFSKSI GGSSIKLAMK DETVPSKIGK LNEKSIPPAE MADGGSRYKS TNALPTINEC  240
LLSRANRLQQ SHVIDDHGLQ NGKDADEFLK ESSPGFDVLV DDELRGSGYY GSEEQYGRSR  300
GHEGGNMTSM NDYDIGHSAD YKMMGDVDHD VYNDVTDFDY ESRQGGQYGW DHRRTSSDKL  360
SLSSAQMERR LFPKSNSPEH VQNVDLRHRL NKQRRGNGLR SVINNENAAS RPEERNYRSS  420
RRDSHSSQES TVSNRLRGRI KLPRIPSPVR SSNIRPERDL NRGRPWGRSS PGRSQSLSNQ  480
GSNRDEIKGR LEEDYNNERR TFNGFNSRRE RMDGTSDFAA PKSLAELKGD KHMVMKEQQT  540
LGKRKGFDIE QSGGELSFEG PKPLSEILKR KRQVKAVVDL PINNAERENS ERSMERSTTH  600
PLKQSVLSST GKDETNSLGG IKSAPAETFV QEEDVDVPHR HSSQPMHSTD DHGIEAYDEG  660
LVEEDQEYEG DDQRDDGEYE YEQVDDGEYT YEEGDNIDPE EEYMDDEDGD DFAKKIGVMS  720
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819040.0LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460229.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A1S3CCH60.0A0A1S3CCH6_CUCME; zinc finger CCCH domain-containing protein 17
STRINGXP_008460229.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137