PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022574P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 449aa    MW: 50482.6 Da    PI: 6.8803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022574P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000283433771655
                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     i +++  L++++ +      +K + a++L++++ YIk Lq
  MELO3C022574P1 343 IGDRITALQQIVSPF-----GKTDTASVLTETIGYIKFLQ 377
                     678999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.055327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.59E-5342381No hitNo description
Gene3DG3DSA:4.10.280.108.4E-9342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10342393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAEECTESSV ATSNSTPSNW WDINHNHNHH HHHHPSLSYN SHWLLPNPNS NSSCEEDVSI  60
STSSFTNHLL PHHPSDNNHL WTQVLLNIGN DVELQSNEED IEGNFLETIS SRSSMSTTGI  120
FEPTACSDYL KKMDTSNNNN NNWDDTFQTF NTNTNNNNRL LTSSQAHMLQ NERFLKLSNL  180
VNRWSIALPS PDPHLRHLTD DQHDHLRATT VPTHEILESA DGVVPHQGLD PCDSSFLRRT  240
LQNQNYGDYI SFNGRLAKPM VGINSSSNNP CFKSSLNLSA DSKKQIHQIC SPTRISGRGS  300
GGVSNEGKKK RSEESSSETS TKKAKQDNST PYSNKMQQPK VKIGDRITAL QQIVSPFGKT  360
DTASVLTETI GYIKFLQEQV QLLSNPYMKT NSYKDPWQSL ERKEGKGDGK IDLRSRGLCL  420
VPISCTPQVY RENTGSDYWT PYRGCFYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819040.0LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460218.10.0PREDICTED: transcription factor bHLH111
TrEMBLA0A1S3CD900.0A0A1S3CD90_CUCME; transcription factor bHLH111
STRINGXP_008460218.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-48bHLH family protein