PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C022520P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 330aa MW: 35412.7 Da PI: 9.5366 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.7 | 3.6e-37 | 65 | 167 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsss 87 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++ + +sss MELO3C022520P1 65 PPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMsvngtlkipT--------TTSSS 151 5799************************************************************999995554333333211........22222 PP TCP 88 g..kaaksaakskksq 101 + +a +sa k+++++ MELO3C022520P1 152 NqdSADPSAVKKRRKR 167 2111222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-30 | 70 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.204 | 71 | 125 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MADNQKQELD DDDDSPPTHL RINDSDSSRM DLLPLTPKQE HPDSNLPHDL LTFNPDIPKT 60 LSSLPPKRPS TKDRHTKVEG RGRRIRIPAT CAARIFQLTR ELGHKSDGET IRWLLERAEP 120 AIIAATGTGT IPAIAMSVNG TLKIPTTTSS SNQDSADPSA VKKRRKRPAN SDYVDVNDAL 180 SVSISASNVA GSPAVQQAFP PGFVPVWAIP SNAIIPGAVF MVPSVACSST RPQLFSFSAP 240 AAPVINTTAR PISAFPSKPD TSHIQSSPTN QSSSTSSSSA SKSQSVMAPI SSSSVQRSGK 300 TTTQMLRDFS LEIYDKEELQ FMTRSSSKH* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 167 | VKKRRKRP |
2 | 161 | 165 | KKRRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460149.1 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 4e-83 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A1S3CBF3 | 0.0 | A0A1S3CBF3_CUCME; transcription factor TCP9 | ||||
STRING | XP_008460149.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-66 | TCP family protein |