PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022516P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21851.3 Da    PI: 10.22
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022516P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.8e-32958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ 
  MELO3C022516P1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFG 58
                    79**********************************************95 PP
2K-box99.83.9e-3380169998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +e++++++ qe++kLk+++e+L r++RhllGedL++Ls+keLq+Le+qLe +l++ R++K+++++eq+e+l+kke +l + n++L+ k+
  MELO3C022516P1  80 FAERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALSQARQRKTQIMIEQMEDLRKKELQLGNLNRELKLKV 169
                     57889*********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.403161IPR002100Transcription factor, MADS-box
CDDcd002656.92E-43272No hitNo description
SuperFamilySSF554559.03E-34291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-33323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2982169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.55585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFGSA  60
GTSKTLERYQ RCCFSPQHNF AERETQNWFQ EISKLKAKYE SLCRTHRHLL GEDLGPLSVK  120
ELQNLEKQLE AALSQARQRK TQIMIEQMED LRKKELQLGN LNRELKLKVP ELFLRRGAIS  180
CPKDHDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21169169MEF2C
5f28_B4e-21169169MEF2C
5f28_C4e-21169169MEF2C
5f28_D4e-21169169MEF2C
6byy_A4e-21169169MEF2 CHIMERA
6byy_B4e-21169169MEF2 CHIMERA
6byy_C4e-21169169MEF2 CHIMERA
6byy_D4e-21169169MEF2 CHIMERA
6bz1_A4e-21169169MEF2 CHIMERA
6bz1_B4e-21169169MEF2 CHIMERA
6bz1_C4e-21169169MEF2 CHIMERA
6bz1_D4e-21169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8997060.0KC899706.1 Cucumis sativus AGL6-like MADS-box protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460143.11e-117PREDICTED: agamous-like MADS-box protein AGL6
RefseqXP_008460144.11e-117PREDICTED: agamous-like MADS-box protein AGL6
SwissprotQ8LLR11e-102MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A1S3CBY81e-116A0A1S3CBY8_CUCME; agamous-like MADS-box protein AGL6
STRINGXP_004145053.11e-132(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-86AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]