PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C022505P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24793.5 Da PI: 7.3576 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.2 | 6.4e-39 | 29 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll+++p+ +r da +l+yeA ar+rdPvyG+v+ i++lqqq+ +l+ael MELO3C022505P1 29 PCGACKFLRRKCVKGCIFAPYFDSDQgAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVVNLQAEL 123 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+++++ MELO3C022505P1 124 AYIQAK 129 *99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.329 | 28 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-37 | 29 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MTHTQRSTAL HQDSVMSAGE GGVGHGGGPC GACKFLRRKC VKGCIFAPYF DSDQGAAHFA 60 AVHKVFGASN ASKLLHRIPP PKRLDACVTL CYEALARVRD PVYGCVSQIF SLQQQVVNLQ 120 AELAYIQAKL STLQRLFPPA LQTPSPTTCN TPLPEAIPDS DMGLLSNVPM ILDPLQTQLG 180 CNEMTNSFLN PVDYQDQMGE DGDLQSLARE FVSRYLPGVR MRPPCSQI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-35 | 26 | 130 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-35 | 26 | 130 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460130.1 | 1e-169 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 6e-68 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1S3CBD6 | 1e-168 | A0A1S3CBD6_CUCME; LOB domain-containing protein 19 | ||||
STRING | XP_008460130.1 | 1e-169 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-65 | LOB domain-containing protein 31 |